DiShIn: Semantic Similarity Measures using Disjunctive Shared Information

This software package provides the basic functions to start using semantic similarity measures directly from a rdf or owl file.

Contents:

• Getting started
  • Installation
  • Quick start
• Other Examples
  • Gene Ontology (GO) and UniProt proteins
  • Chemical Entities of Biological Interest (ChEBI) Example
  • Human Phenotype (HP) Example
  • Human Disease Ontology (HDO) Example
  • Ontology for Stem Cell Investigations (OSCI)
  • Cell Ontology (CL)
  • Environmental conditions, treatments and exposures ontology (ECTO)
  • Environment Ontology (ENVO)
  • Medical Subject Headings (MeSH) Example
  • Radiology Lexicon (RadLex) Example
  • WordNet Example
• Data Sources
  • Gene Ontology (GO)
  • ChEBI
  • Human Phenotype ontology (HPO)
  • Human Disease Ontology (DO)
  • Ontology for Stem Cell Investigations (OSCI)
  • Cell Ontology (CL)
  • Environmental conditions, treatments and exposures ontology (ECTO)
  • Environment Ontology (ENVO)
  • Medical Subject Headings (MeSH) Example
  • RadLex
  • WordNet
• API

Reference:

• F. Couto and A. Lamurias, “Semantic similarity definition,” in Encyclopedia of Bioinformatics and Computational Biology (S. Ranganathan, K. Nakai, C. Schönbach, and M. Gribskov, eds.), vol. 1, pp. 870–876, Oxford: Elsevier, 2019 https://doi.org/10.1016/B978-0-12-809633-8.20401-9

Indices and tables

• Index
• Module Index
• Search Page