Data Sources

Gene Ontology (GO)

• Ontology: http://purl.obolibrary.org/obo/go.owl
• Annotation files (extrinsic): http://geneontology.org/gene-associations/goa_uniprot_all_noiea.gaf.gz
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/go202302.db.gz

ChEBI

• Ontology: http://purl.obolibrary.org/obo/chebi/chebi_lite.owl
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/chebi202302.db.gz

Human Phenotype ontology (HPO)

• Ontology: http://purl.obolibrary.org/obo/hp.owl
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/hp202302.db.gz

Human Disease Ontology (DO)

• Ontology: http://purl.obolibrary.org/obo/doid.owl
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/doid202302.db.gz

Ontology for Stem Cell Investigations (OSCI)

• Ontology: https://raw.githubusercontent.com/stemcellontologyresource/OSCI/master/src/ontology/osci.owl
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/osci202302.db.gz

Cell Ontology (CL)

• Ontology: http://purl.obolibrary.org/obo/cl.owl
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/cl202302.db.gz

Environmental conditions, treatments and exposures ontology (ECTO)

• Ontology: http://purl.obolibrary.org/obo/ecto.owl
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/ecto202302.db.gz

Environment Ontology (ENVO)

• Ontology: http://purl.obolibrary.org/obo/envo.owl
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/envo202302.db.gz

Medical Subject Headings (MeSH) Example

• Ontology: ftp://nlmpubs.nlm.nih.gov/online/mesh/rdf/mesh.nt.gz
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/mesh202302.db.gz

RadLex

• Ontology: http://bioportal.bioontology.org/ontologies/RADLEX
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/radlex.db

WordNet

• Ontology: http://www.w3.org/2006/03/wn/wn20/rdf/wordnet-hyponym.rdf
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/wordnet202302.db.gz