Data Sources

Gene Ontology (GO)

• Ontology: http://purl.obolibrary.org/obo/go.owl
• Annotation files (extrinsic): http://geneontology.org/gene-associations/goa_uniprot_all_noiea.gaf.gz
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/go202104.db.gz

ChEBI

• Ontology: http://purl.obolibrary.org/obo/chebi/chebi_lite.owl
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/chebi202104.db.gz

Human Phenotype ontology (HPO)

• Ontology: http://purl.obolibrary.org/obo/hp.owl
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/hp202104.db.gz

Human Disease Ontology (DO)

• Ontology: http://purl.obolibrary.org/obo/doid.owl
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/doid202104.db.gz

Medical Subject Headings (MeSH) Example

• Ontology: ftp://nlmpubs.nlm.nih.gov/online/mesh/rdf/mesh.nt.gz
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/mesh202104.db.gz

RadLex

• Ontology: http://bioportal.bioontology.org/ontologies/RADLEX
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/radlex.db

WordNet

• Ontology: http://www.w3.org/2006/03/wn/wn20/rdf/wordnet-hyponym.rdf
• SemanticBase: http://labs.rd.ciencias.ulisboa.pt/dishin/wordnet202104.db.gz